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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
29
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
61
DNA binding
29
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
25
transcription factor
21
histone
21
histone modification
15
control
12
narrow histone mark
9
broad histone mark
7
RNA binding protein
6
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
72
bam
67
bigWig
57
bed narrowPeak
29
tsv
24
tagAlign
23
fastq
15
bigBed narrowPeak
5
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
113
Homo sapiens
Biosample type
tissue
67
cell line
42
in vitro differentiated cells
4
primary cell
Organ
40
liver
18
blood
18
bodily fluid
8
embryo
6
epithelium
4
connective tissue
2
kidney
2
pancreas
Project
113
AMP
Genome assembly (visualization)
79
hg19
61
GRCh38
Lab
75
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
14
2
1
1
GM12878
18
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
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