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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
20
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
5
GRO-seq
3
ATAC-seq
Assay category
49
DNA binding
29
Transcription
13
DNA accessibility
Target of assay
23
histone
23
histone modification
14
transcription factor
12
broad histone mark
12
control
11
narrow histone mark
6
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
74
fastq
69
bam
65
bigWig
37
bed narrowPeak
21
bigBed narrowPeak
20
tsv
Organism
95
Homo sapiens
Biosample type
43
in vitro differentiated cells
28
tissue
24
cell line
1
stem cell
Organ
19
blood
19
bodily fluid
19
lung
14
embryo
7
spleen
5
liver
1
adipose tissue
1
connective tissue
1
musculature of body
Project
77
AMP
19
LungMap
Genome assembly (visualization)
60
hg19
57
GRCh38
5
hg18
Lab
77
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
GRO-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
9
4
1
definitive endodermal cell
3
2
1
primitive gut cell
3
2
1
embryonic stem cell
3
2
endocrine cell
3
2
+ See 3 more…
tissue
lung
10
9
spleen
7
adipose tissue
1
skeletal muscle tissue
1
cell line
GM12878
18
1
HepG2
5
stem cell
hESC
1
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