Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
5
GRO-seq
5
total RNA-seq
3
ATAC-seq
Assay category
119
DNA binding
5
Transcription
3
DNA accessibility
Target of assay
56
transcription factor
38
histone
38
histone modification
25
control
19
broad histone mark
19
narrow histone mark
10
RNA binding protein
9
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
129
fastq
124
bam
106
bigWig
93
bed narrowPeak
71
bigBed narrowPeak
15
bed bed3+
5
tsv
Organism
132
Homo sapiens
Biosample type
57
tissue
47
in vitro differentiated cells
24
cell line
4
stem cell
Organ
68
liver
19
blood
19
bodily fluid
19
epithelium
14
embryo
7
spleen
1
adipose tissue
1
connective tissue
1
musculature of body
Project
132
AMP
Genome assembly (visualization)
106
hg19
103
GRCh38
5
hg18
Lab
132
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
132 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
GRO-seq
total RNA-seq
ATAC-seq
tissue
liver
38
right lobe of liver
10
spleen
7
adipose tissue
1
skeletal muscle tissue
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
1
Posterior foregut
5
1
definitive endodermal cell
5
1
primitive gut cell
5
1
+ See 1 more…
cell line
GM12878
18
1
HepG2
5
stem cell
hESC
3
1
See all biosamples
Download