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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
125
total RNA-seq
56
ChIP-seq
48
single cell RNA-seq
Assay category
187
DNA accessibility
173
Transcription
56
DNA binding
Target of assay
26
histone
26
histone modification
18
transcription factor
14
narrow histone mark
12
broad histone mark
12
control
10
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
412
bam
400
bigWig
231
bed narrowPeak
231
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
169
tsv
80
fastq
Organism
416
Homo sapiens
Biosample type
290
tissue
103
primary cell
23
cell line
Organ
161
pancreas
81
kidney
53
epithelium
43
musculature of body
35
heart
32
limb
30
brain
20
connective tissue
18
blood
18
bodily fluid
18
ureter
7
eye
7
liver
7
spleen
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
416
AMP
Genome assembly (visualization)
400
GRCh38
377
hg19
Lab
416
AMP-T2D consortium
Audit category:
32
inconsistent ontology term
BIOSAMPLE
ASSAY
416 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
tissue
islet of Langerhans
120
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
pancreatic beta cell
9
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
pancreatic alpha cell
7
+ See 32 more…
cell line
GM12878
18
HepG2
5
See all biosamples
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