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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
56
ChIP-seq
10
MeRIP-seq
9
total RNA-seq
1
ATAC-seq
Assay category
189
DNA accessibility
56
DNA binding
9
Transcription
Target of assay
26
histone
26
histone modification
18
transcription factor
17
control
14
narrow histone mark
12
broad histone mark
10
RNA binding protein
6
chromatin remodeller
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
254
bam
241
bigWig
233
bed narrowPeak
232
bigBed narrowPeak
188
bed bed3+
188
bed broadPeak
188
bigBed broadPeak
30
fastq
9
tsv
Organism
264
Homo sapiens
Biosample type
174
tissue
61
primary cell
29
cell line
Organ
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
26
epithelium
24
connective tissue
18
blood
18
bodily fluid
18
ureter
14
pancreas
7
eye
7
liver
7
spleen
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
264
AMP
Genome assembly (visualization)
242
GRCh38
219
hg19
Lab
254
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
32
inconsistent ontology term
BIOSAMPLE
ASSAY
264 results
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Clear Filters
DNase-seq
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
osteoblast
1
4
1
cardiac muscle cell
1
3
+ See 18 more…
cell line
GM12878
18
EndoC_BH1
6
HepG2
5
See all biosamples
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