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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
32
pCHi-C
20
total RNA-seq
11
Hi-C
4
ATAC-seq
Assay category
62
DNA binding
20
Transcription
11
3D chromatin structure
4
DNA accessibility
Target of assay
42
transcription factor
10
histone
10
histone modification
8
RNA binding protein
8
chromatin remodeller
8
control
6
narrow histone mark
4
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
80
bam
76
bigWig
65
fastq
54
bed narrowPeak
51
bigBed narrowPeak
50
tsv
12
bedpe bed3+
10
hic
2
ibed
Organism
129
Homo sapiens
Biosample type
62
cell line
54
tissue
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
45
blood
45
bodily fluid
15
spleen
14
pancreas
9
liver
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
122
AMP
7
T1D
Genome assembly (visualization)
88
hg19
72
GRCh38
Lab
129
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
cell line
GM12878
45
HepG2
5
1
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
+ See 3 more…
tissue
spleen
14
1
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 16 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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