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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
28
ChIP-seq
20
total RNA-seq
13
Hi-C
4
ATAC-seq
1
MPRA
Assay category
28
DNA binding
20
Transcription
13
3D chromatin structure
4
DNA accessibility
Target of assay
14
transcription factor
10
histone
10
histone modification
6
RNA binding protein
6
chromatin remodeller
6
narrow histone mark
4
broad histone mark
4
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
50
tsv
46
bam
46
bigWig
30
fastq
24
bed narrowPeak
21
bigBed narrowPeak
15
bedpe bed3+
13
hic
3
cool
2
ibed
1
txt
Organism
97
Homo sapiens
Biosample type
47
tissue
35
cell line
8
in vitro differentiated cells
4
primary cell
4
stem cell
Organ
18
blood
18
bodily fluid
17
pancreas
9
epithelium
8
liver
8
spleen
7
heart
5
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
88
AMP
7
T1D
3
HPAP
Genome assembly (visualization)
61
hg19
42
GRCh38
Lab
95
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
98 results
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Clear Filters
pCHi-C
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
MPRA
tissue
spleen
1
7
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 16 more…
cell line
GM12878
18
EndoC_BH1
1
2
2
HepG2
5
early embryonic cell
2
MCF-7
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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