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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
187
total RNA-seq
34
ATAC-seq
17
pCHi-C
10
snATAC-seq
9
single cell RNA-seq
1
DNAme array
Assay category
196
Transcription
190
DNA binding
44
DNA accessibility
1
DNA methylation
Target of assay
147
histone
147
histone modification
80
broad histone mark
67
narrow histone mark
30
transcription factor
13
control
11
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
329
bigWig
307
bam
178
tsv
154
bed narrowPeak
90
tagAlign
30
fastq
21
bigBed narrowPeak
2
bed bed3+
Organism
447
Homo sapiens
Biosample type
206
primary cell
132
in vitro differentiated cells
66
tissue
44
cell line
Organ
61
pancreas
26
epithelium
19
lung
18
blood
18
bodily fluid
7
spleen
5
liver
3
heart
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
276
AMP
153
T1D
19
LungMap
Genome assembly (visualization)
342
hg19
302
GRCh38
Lab
235
Kyle Gaulton, UCSD
194
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
90
inconsistent ontology term
BIOSAMPLE
ASSAY
448 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
single cell RNA-seq
DNAme array
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 11 more…
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
37
5
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
tissue
islet of Langerhans
36
lung
10
9
spleen
7
cardiac atrium
1
cardiac ventricle
1
+ See 2 more…
cell line
EndoC_BH1
1
4
16
GM12878
18
HepG2
5
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