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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
425
ChIP-seq
5
total RNA-seq
Assay category
425
DNA binding
5
Transcription
Target of assay
256
transcription factor
93
histone
93
histone modification
73
control
66
recombinant protein
54
broad histone mark
41
RNA binding protein
39
narrow histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
416
bam
354
bigWig
348
fastq
330
bed narrowPeak
329
bigBed narrowPeak
78
tagAlign
66
bed broadPeak
60
bigBed broadPeak
5
tsv
3
tar
Organism
430
Homo sapiens
Biosample type
338
cell line
89
tissue
3
primary cell
Organ
320
liver
91
brain
18
blood
18
bodily fluid
7
spleen
epithelium
6
vasculature
3
blood vessel
Project
430
AMP
Genome assembly (visualization)
302
GRCh38
301
hg19
Lab
430
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
430 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
315
5
GM12878
18
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
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