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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
126
ChIP-seq
7
WGBS
5
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
197
DNA accessibility
126
DNA binding
7
DNA methylation
6
Transcription
Target of assay
82
transcription factor
31
RNA binding protein
26
histone
26
histone modification
18
control
16
recombinant protein
14
narrow histone mark
13
chromatin remodeller
12
broad histone mark
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
335
bam
316
bigWig
304
bed narrowPeak
304
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
118
fastq
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
1
csv
Organism
336
Homo sapiens
Biosample type
196
tissue
84
cell line
56
primary cell
Organ
81
kidney
60
liver
43
musculature of body
35
heart
33
blood
33
bodily fluid
32
brain
32
limb
20
epithelium
19
connective tissue
18
ureter
16
spleen
11
pancreas
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
336
AMP
Genome assembly (visualization)
315
GRCh38
284
hg19
Lab
336
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
336 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
tissue
heart
18
muscle of arm
17
spleen
1
13
2
brain
14
kidney
13
+ See 37 more…
cell line
HepG2
45
1
5
GM12878
33
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 18 more…
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