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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
10
MeRIP-seq
9
total RNA-seq
3
Hi-C
1
ATAC-seq
1
DNase-seq
1
MPRA
Assay category
25
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA accessibility
Target of assay
14
transcription factor
9
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
5
nucleotide modification
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
36
bam
31
bigWig
30
fastq
23
bed narrowPeak
22
bigBed narrowPeak
9
tsv
3
bedpe bed3+
3
cool
3
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
txt
Organism
49
Homo sapiens
Biosample type
30
cell line
11
tissue
9
primary cell
Organ
18
blood
18
bodily fluid
13
pancreas
9
epithelium
7
spleen
6
connective tissue
5
liver
Project
47
AMP
3
HPAP
Genome assembly (visualization)
35
hg19
32
GRCh38
Lab
37
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
50 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
Hi-C
ATAC-seq
DNase-seq
MPRA
cell line
GM12878
18
EndoC_BH1
6
HepG2
5
MIN6
1
tissue
spleen
7
islet of Langerhans
4
primary cell
osteoblast
4
1
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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