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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
321
ChIP-seq
110
total RNA-seq
40
single cell RNA-seq
9
WGBS
8
ATAC-seq
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
321
DNA binding
150
Transcription
15
DNA methylation
14
DNA accessibility
Target of assay
206
histone modification
205
histone
113
broad histone mark
91
narrow histone mark
61
transcription factor
54
control
14
RNA binding protein
9
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
358
fastq
312
bam
301
bigWig
163
bed narrowPeak
94
tsv
85
tagAlign
63
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
19
zippedFastqFolder
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
493
Homo sapiens
Biosample type
291
tissue
118
primary cell
68
in vitro differentiated cells
23
cell line
Organ
207
pancreas
125
connective tissue
59
liver
57
adipose tissue
48
epithelium
26
musculature of body
18
blood
18
bodily fluid
7
spleen
Project
441
AMP
59
HPAP
Genome assembly (visualization)
302
hg19
278
GRCh38
Lab
441
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
500 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 5 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
13
15
3
skeletal muscle myoblast
15
1
2
pancreatic beta cell
13
1
2
pancreatic endocrine cell
12
+ See 1 more…
in vitro differentiated cells
adipocyte
67
1
cell line
GM12878
18
HepG2
5
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