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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
25
total RNA-seq
21
ChIP-seq
2
Hi-C
Assay category
26
DNA accessibility
25
Transcription
21
DNA binding
2
3D chromatin structure
Target of assay
17
histone
histone modification
15
transcription factor
10
broad histone mark
7
RNA binding protein
7
narrow histone mark
6
chromatin remodeller
6
control
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
72
bam
41
bed narrowPeak
40
bigWig
25
tsv
23
fastq
14
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
74
Homo sapiens
Biosample type
41
tissue
28
cell line
5
in vitro differentiated cells
Organ
45
pancreas
17
blood
17
bodily fluid
6
epithelium
5
liver
1
adipose tissue
1
connective tissue
1
spleen
Project
74
AMP
Genome assembly (visualization)
68
hg19
66
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
74 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
19
1
adipose tissue(adipose white tissue)
1
spleen
1
cell line
GM12878
17
EndoC_BH1
1
1
3
1
HepG2
5
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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