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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
16
snATAC-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
229
DNA binding
26
DNA accessibility
15
DNA methylation
Target of assay
162
histone modification
161
histone
89
broad histone mark
72
narrow histone mark
42
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
406
November, 2017
292
October, 2019
254
August, 2017
218
June, 2019
200
May, 2022
173
February, 2023
173
May, 2021
161
August, 2021
152
February, 2021
152
May, 2020
120
May, 2019
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
51
December, 2017
47
September, 2018
47
September, 2023
43
July, 2019
40
May, 2024
36
November, 2019
35
December, 2018
25
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
15
March, 2020
15
May, 2023
12
November, 2020
11
September, 2017
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
July, 2018
4
October, 2022
1
August, 2022
1
December, 2019
Available data
233
fastq
228
bam
224
bigWig
99
bed narrowPeak
tsv
71
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
263
Homo sapiens
Biosample type
203
tissue
in vitro differentiated cells
67
primary cell
Organ
107
pancreas
57
adipose tissue
57
connective tissue
54
liver
29
epithelium
26
musculature of body
8
blood
8
bodily fluid
Project
254
AMP
16
T1D
Genome assembly (visualization)
138
hg19
111
GRCh38
Lab
254
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
270 results
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ChIP-seq
snATAC-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
48
3
1
islet of Langerhans
42
4
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
4
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primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
peripheral blood mononuclear cell
8
+ See 1 more…
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