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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
38
snATAC-seq
34
single cell RNA-seq
31
total RNA-seq
25
ChIP-seq
Assay category
115
DNA accessibility
65
Transcription
41
DNA methylation
25
DNA binding
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
59
bed narrowPeak
54
bam
54
fastq
46
bigWig
21
bigBed narrowPeak
7
txt
5
tsv
1
bed bed3+
Organism
246
Homo sapiens
Biosample type
142
primary cell
81
tissue
23
cell line
Organ
112
pancreas
80
epithelium
45
liver
26
blood
26
bodily fluid
7
spleen
2
musculature of body
Project
134
HPAP
96
AMP
16
T1D
Genome assembly (visualization)
65
hg19
26
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
40
Kyle Gaulton, UCSD
32
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
246 results
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Clear Filters
ATAC-seq
WGBS
snATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
primary cell
Langerhans cell
21
33
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
4
6
spleen
7
pancreas
4
skeletal muscle tissue
1
1
cell line
GM12878
18
HepG2
5
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