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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
DNase-seq
8
snATAC-seq
7
WGBS
FAIRE-seq
Assay category
70
DNA binding
17
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
667
February, 2021
397
November, 2017
351
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
86
November, 2018
80
April, 2019
75
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
86
bam
86
fastq
79
bigWig
72
bed narrowPeak
72
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
94
Homo sapiens
Biosample type
61
cell line
33
tissue
primary cell
Organ
53
liver
15
blood
15
bodily fluid
14
pancreas
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
86
AMP
8
T1D
Genome assembly (visualization)
79
GRCh38
70
hg19
Lab
86
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
FAIRE-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
DNase-seq
snATAC-seq
WGBS
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
pancreas
4
2
body of pancreas
2
2
islet of Langerhans
4
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