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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
9
DNase-seq
2
total RNA-seq
1
FAIRE-seq
Assay category
106
DNA binding
10
DNA accessibility
2
Transcription
Target of assay
76
transcription factor
32
RNA binding protein
30
histone
30
histone modification
19
broad histone mark
13
recombinant protein
11
narrow histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
0
January, 2021
Available data
118
bam
118
bigWig
116
bed narrowPeak
116
bigBed narrowPeak
104
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
2
tsv
Organism
118
Homo sapiens
Biosample type
62
tissue
54
cell line
2
primary cell
Organ
49
liver
45
pancreas
12
blood
12
bodily fluid
6
adipose tissue
6
connective tissue
4
spleen
2
brain
2
epithelium
Project
118
AMP
Genome assembly (visualization)
126
GRCh38
118
hg19
Lab
118
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
tissue
body of pancreas
25
2
endocrine pancreas
14
liver
4
2
omental fat pad
3
1
spleen
3
1
+ See 4 more…
cell line
HepG2
42
GM12878
12
primary cell
pancreatic acinar cell
2
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