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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
16
snATAC-seq
10
DNase-seq
10
MeRIP-seq
7
WGBS
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
65
DNA binding
28
DNA accessibility
7
DNA methylation
5
Transcription
Target of assay
59
transcription factor
20
RNA binding protein
16
recombinant protein
11
control
5
nucleotide modification
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
88
bam
83
fastq
80
bigWig
70
bed narrowPeak
69
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tsv
1
csv
Organism
115
Homo sapiens
Biosample type
62
cell line
38
tissue
15
primary cell
Organ
48
liver
25
pancreas
23
blood
23
bodily fluid
9
spleen
7
connective tissue
6
epithelium
2
brain
1
adipose tissue
Project
99
AMP
16
T1D
Genome assembly (visualization)
80
GRCh38
72
hg19
Lab
89
AMP-T2D consortium
16
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
115 results
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Clear Filters
ChIP-seq
snATAC-seq
DNase-seq
MeRIP-seq
WGBS
total RNA-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
40
1
GM12878
15
EndoC_BH1
6
tissue
spleen
6
1
2
islet of Langerhans
4
4
pancreas
4
2
1
liver
4
2
body of pancreas
2
2
+ See 3 more…
primary cell
peripheral blood mononuclear cell
8
osteoblast
1
4
1
pancreatic cell
1
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