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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
16
snATAC-seq
10
MeRIP-seq
8
DNase-seq
7
WGBS
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
26
DNA accessibility
7
DNA methylation
5
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
11
control
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
91
bam
86
fastq
83
bigWig
73
bed narrowPeak
72
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tsv
1
csv
Organism
118
Homo sapiens
Biosample type
67
cell line
36
tissue
15
primary cell
Organ
53
liver
25
pancreas
23
blood
23
bodily fluid
9
spleen
7
connective tissue
6
epithelium
brain
1
adipose tissue
Project
102
AMP
16
T1D
Genome assembly (visualization)
83
GRCh38
75
hg19
Lab
92
AMP-T2D consortium
16
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
brain
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
snATAC-seq
MeRIP-seq
DNase-seq
WGBS
total RNA-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
tissue
spleen
6
1
2
islet of Langerhans
4
4
pancreas
4
2
1
liver
4
2
body of pancreas
2
2
+ See 2 more…
primary cell
peripheral blood mononuclear cell
8
osteoblast
1
4
1
pancreatic cell
1
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