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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
8
total RNA-seq
4
pCHi-C
2
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
24
DNA binding
8
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
9
control
8
histone
8
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
4
narrow histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
0
July, 2019
Available data
34
bam
27
bigWig
16
bed narrowPeak
13
tsv
8
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
41
Homo sapiens
Biosample type
359
tissue
66
primary cell
41
cell line
16
in vitro differentiated cells
4
stem cell
Organ
20
pancreas
17
kidney
7
epithelium
1
mammary gland
Project
38
AMP
3
T1D
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
DNase-seq
Hi-C
cell line
Panc1
13
1
1
EndoC_BH1
1
2
2
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
MCF-7
1
RCC 7860 VHL
1
fibroblast cell line
1
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