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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
60
total RNA-seq
9
RRBS
4
Hi-C
3
single cell RNA-seq
2
small RNA-seq
Assay category
100
DNA accessibility
65
Transcription
9
DNA methylation
4
3D chromatin structure
Target of assay
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
0
November, 2019
Available data
112
bigWig
108
bam
63
tsv
9
bed bedMethyl
9
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
178
Homo sapiens
Biosample type
310
tissue
178
primary cell
17
cell line
5
in vitro differentiated cells
Organ
13
epithelium
8
connective tissue
7
brain
7
kidney
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
133
AMP
45
T1D
Genome assembly (visualization)
121
hg19
63
GRCh38
Lab
133
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
BIOSAMPLE
ASSAY
178 results
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Clear Filters
ATAC-seq
total RNA-seq
RRBS
Hi-C
single cell RNA-seq
small RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
T-helper 2 cell
2
2
central memory CD8-positive, alpha-beta T cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
effector memory CD8-positive, alpha-beta T cell
2
2
gamma-delta T cell
2
2
mature natural killer cell
2
2
memory B cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
monocyte
2
2
naive B cel
2
2
naive regulatory T cell
2
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
2
regulatory T cell
2
2
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
immature natural killer cell
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
myeloid dendritic cell
1
1
natural killer cell
1
1
plasma cell
1
1
plasmacytoid dendritic cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac ventricle fibroblast
1
choroid plexus epithelial cell
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
glomerular endothelial cell
1
hepatocyte
1
mesangial cell
1
neutrophil
1
pericardium fibroblast
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
smooth muscle cell of the coronary artery
1
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