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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
single cell RNA-seq
27
snATAC-seq
6
WGBS
1
ATAC-seq
1
pCHi-C
1
total RNA-seq
Assay category
61
Transcription
28
DNA accessibility
6
DNA methylation
Date released
206
May, 2021
147
May, 2020
134
May, 2022
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
93
fastq
55
tsv
51
bam
50
bigWig
1
bed bed3
1
bed bed3+
1
bed narrowPeak
Organism
96
Homo sapiens
Biosample type
665
tissue
96
cell line
96
primary cell
26
in vitro differentiated cells
Organ
43
pancreas
39
epithelium
5
connective tissue
Project
51
AMP
45
HPAP
Genome assembly (visualization)
51
hg19
50
GRCh38
Lab
51
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
27
audit script error
6
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
96 results
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single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
primary cell
Langerhans cell
12
27
pancreatic alpha cell
7
6
pancreatic beta cell
9
pancreatic acinar cell
5
pancreatic delta cell
4
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