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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
670
total RNA-seq
84
RNA microarray
66
single cell RNA-seq
33
ChIP-seq
27
snATAC-seq
22
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
736
Transcription
49
DNA accessibility
33
DNA binding
6
DNA methylation
Target of assay
19
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
766
bam
741
bigWig
728
tsv
125
fastq
89
txt
44
bed narrowPeak
21
bigBed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
913
Homo sapiens
Biosample type
672
tissue
119
cell line
96
primary cell
26
in vitro differentiated cells
Organ
457
connective tissue
386
adipose tissue
189
pancreas
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
65
epithelium
18
blood
18
bodily fluid
8
kidney
8
liver
8
skeleton
7
spleen
6
limb
Project
868
AMP
45
HPAP
Genome assembly (visualization)
764
hg19
758
GRCh38
Lab
868
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
134
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
913 results
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total RNA-seq
RNA microarray
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
islet of Langerhans
120
bone element
84
bone tissue
58
spleen
7
+ See 15 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
GM12878
18
HepG2
5
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
12
27
pancreatic alpha cell
7
6
pancreatic beta cell
9
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 12 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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