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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
665
total RNA-seq
84
RNA microarray
61
single cell RNA-seq
27
snATAC-seq
22
ATAC-seq
8
ChIP-seq
6
WGBS
2
pCHi-C
Assay category
726
Transcription
49
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
736
bam
715
bigWig
715
tsv
95
fastq
84
txt
23
bed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
csv
Organism
875
Homo sapiens
Biosample type
657
tissue
96
cell line
96
primary cell
26
in vitro differentiated cells
Organ
457
connective tissue
386
adipose tissue
189
pancreas
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
65
epithelium
kidney
8
skeleton
6
limb
3
liver
Project
830
AMP
45
HPAP
Genome assembly (visualization)
738
hg19
732
GRCh38
Lab
830
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
134
inconsistent ontology term
27
audit script error
1
inconsistent replicate
organ_slims!
kidney
BIOSAMPLE
ASSAY
875 results
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Clear Filters
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ATAC-seq
ChIP-seq
WGBS
pCHi-C
tissue
adipose tissue
381
islet of Langerhans
120
bone element
84
bone tissue
58
visceral abdominal adipose tissue
3
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
12
27
pancreatic alpha cell
7
6
pancreatic beta cell
9
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 12 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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