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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
85
single cell RNA-seq
83
ATAC-seq
53
WGBS
22
snATAC-seq
18
small RNA-seq
15
RRBS
8
Hi-C
2
FAIRE-seq
Assay category
293
Transcription
107
DNA accessibility
68
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
270
bam
269
bigWig
229
tsv
134
zippedFastqFolder
74
fastq
45
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
7
txt
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
476
Homo sapiens
Biosample type
263
tissue
213
primary cell
Organ
267
pancreas
126
epithelium
50
liver
25
heart
20
connective tissue
18
brain
12
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
11
kidney
5
limb
3
artery
2
pericardium
1
eye
Project
342
AMP
134
HPAP
Genome assembly (visualization)
294
hg19
243
GRCh38
Lab
278
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
476 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
tissue
islet of Langerhans
126
18
1
liver
22
20
1
heart left ventricle
2
2
4
1
omental fat pad
4
1
right lobe of liver
2
1
2
+ See 26 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
7
22
25
pancreatic beta cell
9
13
16
pancreatic acinar cell
5
4
pancreatic delta cell
4
+ See 36 more…
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