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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
91
ChIP-seq
48
single cell RNA-seq
29
ATAC-seq
1
DNAme array
Assay category
291
Transcription
91
DNA binding
29
DNA accessibility
1
DNA methylation
Target of assay
66
histone
66
histone modification
39
broad histone mark
27
narrow histone mark
15
control
10
transcription factor
4
RNA binding protein
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
385
bam
357
bigWig
286
tsv
84
bed narrowPeak
64
bigBed narrowPeak
50
fastq
6
tagAlign
Organism
412
Homo sapiens
Biosample type
238
tissue
85
in vitro differentiated cells
68
primary cell
21
cell line
Organ
217
pancreas
60
heart
59
epithelium
23
kidney
3
connective tissue
2
embryo
Project
411
AMP
1
T1D
Genome assembly (visualization)
370
hg19
369
GRCh38
Lab
412
AMP-T2D consortium
235
Kyle Gaulton, UCSD
Audit category:
95
inconsistent ontology term
BIOSAMPLE
ASSAY
412 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNAme array
tissue
islet of Langerhans
156
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
+ See 2 more…
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
primary cell
monocyte
1
1
13
1
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 14 more…
cell line
EndoC_BH1
4
1
16
See all biosamples
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