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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
total RNA-seq
91
ChIP-seq
51
single cell RNA-seq
19
ATAC-seq
18
small RNA-seq
9
WGBS
2
FAIRE-seq
Assay category
402
Transcription
91
DNA binding
21
DNA accessibility
9
DNA methylation
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
4
control
4
transcription factor
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
552
bigWig
523
bam
402
tsv
140
bed narrowPeak
90
tagAlign
50
fastq
23
bed bedMethyl
23
bigBed bedMethyl
6
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
523
Homo sapiens
Biosample type
218
tissue
215
primary cell
85
in vitro differentiated cells
5
cell line
Organ
201
pancreas
48
epithelium
24
heart
19
connective tissue
13
brain
12
adipose tissue
9
blood vessel
9
vasculature
7
kidney
7
liver
5
musculature of body
3
artery
2
embryo
1
limb
1
pericardium
Project
387
AMP
136
T1D
Genome assembly (visualization)
519
GRCh38
512
hg19
Lab
388
AMP-T2D consortium
135
Kyle Gaulton, UCSD
Audit category:
79
inconsistent ontology term
BIOSAMPLE
ASSAY
523 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
152
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
primary cell
monocyte
51
84
13
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 27 more…
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
cell line
EndoC_BH1
4
1
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