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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
total RNA-seq
165
ChIP-seq
88
single cell RNA-seq
37
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
406
Transcription
165
DNA binding
37
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
470
bigWig
441
bam
337
tsv
133
bed narrowPeak
91
fastq
90
tagAlign
19
zippedFastqFolder
2
bed bed3+
Organism
626
Homo sapiens
Biosample type
313
primary cell
160
tissue
132
in vitro differentiated cells
21
cell line
Organ
237
pancreas
78
epithelium
4
connective tissue
3
heart
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
414
AMP
153
T1D
59
HPAP
Genome assembly (visualization)
480
hg19
443
GRCh38
Lab
332
AMP-T2D consortium
235
Kyle Gaulton, UCSD
59
Klaus Kaestner, Upenn
Audit category:
96
inconsistent ontology term
BIOSAMPLE
ASSAY
626 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
52
85
13
1
1
Langerhans cell
40
CD8-positive, alpha-beta T cell
2
33
1
pancreatic alpha cell
15
7
2
pancreatic beta cell
1
9
1
+ See 27 more…
tissue
islet of Langerhans
156
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
EndoC_BH1
4
1
16
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