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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
ChIP-seq
116
total RNA-seq
48
single cell RNA-seq
Assay category
280
DNA binding
164
Transcription
Target of assay
204
transcription factor
73
histone
73
histone modification
66
recombinant protein
45
broad histone mark
31
RNA binding protein
28
narrow histone mark
13
chromatin remodeller
2
other context
2
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
444
bam
443
bigWig
280
bed narrowPeak
280
bigBed narrowPeak
273
fastq
164
tsv
55
bed broadPeak
54
tagAlign
50
bigBed broadPeak
Organism
444
Homo sapiens
Biosample type
217
cell line
173
tissue
54
primary cell
Organ
217
liver
153
pancreas
63
brain
37
epithelium
4
vasculature
2
blood vessel
2
connective tissue
Project
444
AMP
Genome assembly (visualization)
445
hg19
444
GRCh38
Lab
444
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
17
inconsistent control read length
2
inconsistent control run_type
BIOSAMPLE
ASSAY
444 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
217
tissue
islet of Langerhans
116
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
+ See 2 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 13 more…
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