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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
293
total RNA-seq
48
single cell RNA-seq
Assay category
341
Transcription
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
123
August, 2021
89
August, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
20
November, 2019
16
February, 2023
16
October, 2019
15
February, 2018
9
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
472
bigWig
447
bam
341
tsv
135
bed narrowPeak
90
tagAlign
50
fastq
3
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
341
Homo sapiens
Biosample type
154
tissue
104
primary cell
79
in vitro differentiated cells
4
cell line
Organ
193
pancreas
39
epithelium
7
connective tissue
3
heart
2
embryo
Project
290
AMP
51
T1D
Genome assembly (visualization)
341
GRCh38
341
hg19
Lab
290
AMP-T2D consortium
51
Kyle Gaulton, UCSD
Audit category:
75
inconsistent ontology term
BIOSAMPLE
ASSAY
341 results
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total RNA-seq
single cell RNA-seq
tissue
islet of Langerhans
152
cardiac atrium
1
cardiac ventricle
1
primary cell
monocyte
51
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
osteoblast
4
+ See 13 more…
in vitro differentiated cells
cardiomyocytes
59
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
endothelial cell
1
+ See 8 more…
cell line
EndoC_BH1
4
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