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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
48
single cell RNA-seq
15
ChIP-seq
10
MeRIP-seq
9
ATAC-seq
1
DNase-seq
Assay category
172
Transcription
15
DNA binding
10
DNA accessibility
Target of assay
12
histone
12
histone modification
10
broad histone mark
8
control
5
nucleotide modification
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
185
bam
183
bigWig
168
tsv
67
fastq
14
bed narrowPeak
14
tagAlign
7
bigBed narrowPeak
5
bed broadPeak
1
bed bed3+
1
bigBed broadPeak
Organism
207
Homo sapiens
Biosample type
147
tissue
54
primary cell
6
cell line
Organ
172
pancreas
39
epithelium
16
brain
9
connective tissue
1
adipose tissue
1
spleen
Project
207
AMP
Genome assembly (visualization)
184
GRCh38
183
hg19
Lab
196
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
12
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
207 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans
120
4
1
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
+ See 1 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
osteoblast
4
1
1
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 11 more…
cell line
EndoC_BH1
6
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