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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
50
ChIP-seq
11
single cell RNA-seq
1
pCHi-C
Assay category
201
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
294
bam
271
bigWig
200
tsv
50
tagAlign
27
bed narrowPeak
11
fastq
Organism
352
Homo sapiens
Biosample type
193
tissue
158
primary cell
1
cell line
Organ
194
liver
pancreas
33
epithelium
2
connective tissue
Project
307
AMP
45
T1D
Genome assembly (visualization)
271
hg19
218
GRCh38
Lab
307
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
352 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 30 more…
cell line
HepG2
1
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