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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
707
February, 2021
406
November, 2017
396
May, 2021
363
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
168
July, 2018
158
May, 2022
120
May, 2019
80
April, 2019
79
December, 2017
77
July, 2019
76
October, 2018
73
September, 2018
72
November, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
77
bigWig
73
bam
65
tsv
7
bed narrowPeak
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
77
Homo sapiens
Biosample type
59
tissue
18
primary cell
Organ
16
connective tissue
15
heart
13
brain
12
adipose tissue
8
musculature of body
7
blood vessel
7
kidney
7
liver
7
vasculature
5
epithelium
4
limb
4
pancreas
3
artery
1
pericardium
Project
77
AMP
Genome assembly (visualization)
72
hg19
71
GRCh38
Lab
77
AMP-T2D consortium
assay_slims!
DNA methylation
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
gastrocnemius medialis
4
heart left ventricle
2
2
+ See 18 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
cardiac atrium fibroblast
1
+ See 10 more…
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