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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
25
ChIP-seq
18
small RNA-seq
RRBS
13
ATAC-seq
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
70
Transcription
25
DNA binding
15
DNA accessibility
12
DNA methylation
8
3D chromatin structure
Target of assay
14
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
93
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
118
bigWig
112
bam
70
tsv
37
fastq
28
bed narrowPeak
23
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
130
Homo sapiens
Biosample type
78
tissue
29
primary cell
23
cell line
Organ
23
heart
18
blood
18
bodily fluid
17
connective tissue
16
brain
14
epithelium
14
liver
12
adipose tissue
11
blood vessel
11
pancreas
11
vasculature
9
musculature of body
7
kidney
7
spleen
5
limb
3
artery
1
pericardium
Project
123
AMP
7
HPAP
Genome assembly (visualization)
112
GRCh38
102
hg19
Lab
123
AMP-T2D consortium
7
Klaus Kaestner, Upenn
assay_title!
RRBS
BIOSAMPLE
ASSAY
130 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
4
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 23 more…
primary cell
pancreatic alpha cell
5
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
pancreatic beta cell
2
skeletal muscle satellite cell
1
1
+ See 16 more…
cell line
GM12878
18
HepG2
5
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