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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
589
total RNA-seq
84
RNA microarray
28
ATAC-seq
27
snATAC-seq
21
single cell RNA-seq
18
WGBS
18
small RNA-seq
RRBS
8
ChIP-seq
Hi-C
3
snDrop-seq
2
FAIRE-seq
2
pCHi-C
Assay category
628
Transcription
57
DNA accessibility
18
DNA methylation
8
DNA binding
Target of assay
6
control
5
transcription factor
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
316
August, 2021
309
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
88
November, 2018
85
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
654
bam
632
bigWig
624
tsv
89
txt
45
fastq
30
bed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bigBed narrowPeak
Organism
800
Homo sapiens
Biosample type
612
tissue
96
cell line
66
primary cell
26
in vitro differentiated cells
Organ
471
connective tissue
398
adipose tissue
150
bone element
89
heart
75
blood vessel
75
vasculature
69
artery
37
epithelium
36
pancreas
15
kidney
13
brain
11
liver
8
skeleton
7
limb
5
musculature of body
1
pericardium
Project
755
AMP
45
HPAP
Genome assembly (visualization)
647
GRCh38
646
hg19
Lab
755
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
RRBS
Hi-C
BIOSAMPLE
ASSAY
800 results
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Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
ChIP-seq
snDrop-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
heart left ventricle
2
2
4
subcutaneous adipose tissue
6
1
+ See 36 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
+ See 13 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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