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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
total RNA-seq
84
RNA microarray
34
pCHi-C
32
ATAC-seq
27
snATAC-seq
21
single cell RNA-seq
18
Hi-C
18
WGBS
18
small RNA-seq
RRBS
11
ChIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
643
Transcription
61
DNA accessibility
18
3D chromatin structure
18
DNA methylation
11
DNA binding
Target of assay
6
control
5
transcription factor
3
histone
3
histone modification
3
narrow histone mark
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
93
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
670
bam
669
tsv
656
bigWig
89
txt
45
fastq
33
bed narrowPeak
12
bedpe bed3+
10
hic
8
bed bedMethyl
8
bigBed bedMethyl
8
tagAlign
6
bed bed3+
6
csv
4
bed bedgraph
4
hdf5
2
bed bed3
2
bigBed narrowPeak
2
ibed
Organism
872
Homo sapiens
Biosample type
656
tissue
107
cell line
71
primary cell
34
in vitro differentiated cells
4
stem cell
Organ
474
connective tissue
399
adipose tissue
150
bone element
96
heart
81
blood vessel
81
vasculature
69
artery
50
pancreas
45
epithelium
18
brain
17
kidney
15
liver
14
musculature of body
11
limb
8
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
820
AMP
45
HPAP
7
T1D
Genome assembly (visualization)
682
hg19
663
GRCh38
Lab
827
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
145
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
RRBS
BIOSAMPLE
ASSAY
872 results
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total RNA-seq
RNA microarray
pCHi-C
ATAC-seq
snATAC-seq
single cell RNA-seq
Hi-C
WGBS
small RNA-seq
ChIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
heart left ventricle
3
1
2
1
4
liver
3
1
1
1
1
+ See 52 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
+ See 18 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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