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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
RRBS
12
WGBS
11
ATAC-seq
8
Hi-C
6
ChIP-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
13
DNA accessibility
12
DNA methylation
8
3D chromatin structure
6
DNA binding
Target of assay
9
control
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
93
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
93
bam
90
bigWig
65
tsv
12
bed narrowPeak
11
fastq
8
bed bedMethyl
8
bigBed bedMethyl
7
bigBed narrowPeak
6
bed bed3+
4
hdf5
Organism
104
Homo sapiens
Biosample type
77
tissue
27
primary cell
Organ
23
heart
17
connective tissue
16
brain
15
pancreas
12
adipose tissue
12
epithelium
11
blood vessel
11
vasculature
9
liver
9
musculature of body
7
kidney
5
limb
3
artery
1
pericardium
Project
104
AMP
Genome assembly (visualization)
86
GRCh38
83
hg19
Lab
104
AMP-T2D consortium
assay_title!
RRBS
BIOSAMPLE
ASSAY
104 results
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total RNA-seq
small RNA-seq
WGBS
ATAC-seq
Hi-C
ChIP-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
2
islet of Langerhans
6
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 23 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle satellite cell
1
1
+ See 17 more…
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