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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
3
Transcription
Target of assay
3
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
46
July, 2019
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
23
bed bedMethyl
23
bigBed bedMethyl
23
bigWig
20
bam
7
bed narrowPeak
4
bed bed3+
4
hdf5
3
tsv
2
bigBed narrowPeak
Organism
46
Homo sapiens
Biosample type
30
tissue
16
primary cell
Organ
14
heart
10
brain
8
epithelium
7
vasculature
6
blood vessel
6
musculature of body
5
kidney
5
limb
3
liver
2
connective tissue
2
pancreas
1
artery
1
eye
1
pericardium
Project
46
AMP
Genome assembly (visualization)
29
hg19
17
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
small RNA-seq
total RNA-seq
BIOSAMPLE
ASSAY
46 results
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Clear Filters
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
1
4
2
gastrocnemius medialis
4
aorta
2
heart right ventricle
2
kidney
1
1
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 10 more…
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