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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
18
small RNA-seq
15
RRBS
10
WGBS
6
Hi-C
4
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
25
DNA methylation
21
Transcription
6
3D chromatin structure
6
DNA accessibility
Target of assay
3
control
Date released
403
November, 2017
322
August, 2017
239
August, 2021
237
October, 2019
217
May, 2021
213
June, 2019
174
May, 2022
156
February, 2021
151
May, 2020
94
December, 2017
88
November, 2018
80
April, 2019
77
February, 2023
74
October, 2018
70
May, 2019
58
July, 2019
48
July, 2018
47
September, 2018
47
September, 2023
46
March, 2020
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
36
bigWig
34
bam
22
bed bedMethyl
22
bigBed bedMethyl
21
tsv
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
58
Homo sapiens
Biosample type
42
tissue
16
primary cell
Organ
15
heart
14
brain
8
epithelium
8
musculature of body
7
vasculature
blood vessel
6
kidney
6
liver
5
connective tissue
5
limb
4
pancreas
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
58
AMP
Genome assembly (visualization)
43
hg19
32
GRCh38
Lab
58
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
58 results
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Clear Filters
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
1
4
2
gastrocnemius medialis
4
right lobe of liver
2
1
body of pancreas
2
frontal cortex
1
1
+ See 21 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain pericyte
1
cardiac fibroblast
1
+ See 10 more…
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