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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
DNase-seq
44
total RNA-seq
23
ChIP-seq
18
small RNA-seq
15
RRBS
5
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
171
DNA accessibility
65
Transcription
23
DNA binding
15
DNA methylation
4
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
263
bigWig
259
bam
194
bed narrowPeak
189
bigBed narrowPeak
168
bed bed3+
164
bed broadPeak
164
bigBed broadPeak
65
tsv
15
bed bedMethyl
15
bigBed bedMethyl
4
hdf5
Organism
278
Homo sapiens
Biosample type
207
tissue
71
primary cell
Organ
84
kidney
47
heart
46
musculature of body
37
brain
32
connective tissue
32
limb
25
epithelium
18
ureter
16
vasculature
13
adipose tissue
13
blood vessel
11
liver
8
pancreas
7
eye
5
artery
2
pericardium
Project
278
AMP
Genome assembly (visualization)
289
GRCh38
278
hg19
Lab
278
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
BIOSAMPLE
ASSAY
278 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart
16
2
1
muscle of arm
17
kidney
13
1
1
brain
12
1
muscle of leg
13
+ See 35 more…
primary cell
skeletal muscle satellite cell
1
7
1
cardiac fibroblast
2
3
1
mesenchymal stem cell
6
epithelial cell of proximal tubule
1
1
2
1
cardiac muscle cell
1
2
1
+ See 24 more…
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