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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
43
ATAC-seq
18
small RNA-seq
15
RRBS
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
1
snATAC-seq
Assay category
65
Transcription
46
DNA accessibility
15
DNA methylation
4
3D chromatin structure
Target of assay
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
96
bigWig
90
bam
65
tsv
45
bed narrowPeak
18
fastq
15
bed bedMethyl
15
bigBed bedMethyl
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
1
txt
Organism
130
Homo sapiens
Biosample type
99
tissue
31
primary cell
Organ
29
liver
24
pancreas
18
connective tissue
17
brain
17
heart
13
epithelium
12
adipose tissue
11
kidney
10
vasculature
9
blood vessel
6
musculature of body
3
artery
2
pericardium
1
eye
Project
130
AMP
Genome assembly (visualization)
130
hg19
79
GRCh38
Lab
92
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
130 results
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Clear Filters
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
Hi-C
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
liver
2
20
1
islet of Langerhans
18
1
heart left ventricle
2
2
1
omental fat pad
4
1
subcutaneous adipose tissue
4
1
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primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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