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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
13
RRBS
12
WGBS
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
25
DNA methylation
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
313
August, 2021
309
May, 2021
288
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
98
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
39
March, 2020
38
November, 2019
34
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
2
June, 2018
1
August, 2022
1
October, 2022
Available data
82
bam
81
bigWig
65
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
2
bigBed narrowPeak
Organism
98
Homo sapiens
Biosample type
73
tissue
25
primary cell
Organ
24
heart
16
connective tissue
15
brain
12
adipose tissue
10
epithelium
10
kidney
10
vasculature
9
blood vessel
9
liver
6
musculature of body
6
pancreas
3
artery
2
pericardium
1
eye
1
limb
Project
98
AMP
Genome assembly (visualization)
85
hg19
79
GRCh38
Lab
98
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
98 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 25 more…
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 15 more…
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