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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
44
total RNA-seq
19
WGBS
18
small RNA-seq
13
RRBS
9
DNase-seq
8
Hi-C
6
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
66
Transcription
32
DNA methylation
18
DNA accessibility
8
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
169
bam
165
bigWig
88
fastq
80
bed narrowPeak
75
bigBed narrowPeak
65
tsv
28
bed bedMethyl
28
bigBed bedMethyl
13
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hdf5
1
csv
Organism
194
Homo sapiens
Biosample type
103
tissue
61
cell line
30
primary cell
Organ
63
liver
24
heart
20
brain
18
connective tissue
15
blood
15
bodily fluid
13
adipose tissue
13
pancreas
12
epithelium
12
vasculature
11
blood vessel
10
kidney
10
musculature of body
9
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
194
AMP
Genome assembly (visualization)
160
hg19
158
GRCh38
Lab
194
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
194 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
RRBS
DNase-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
liver
4
2
1
2
spleen
6
2
1
body of pancreas
2
2
2
2
omental fat pad
4
1
1
+ See 27 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 20 more…
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