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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
15
small RNA-seq
13
RRBS
12
WGBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
49
Transcription
25
DNA methylation
8
DNA accessibility
7
3D chromatin structure
Target of assay
3
control
Date released
406
November, 2017
333
May, 2020
311
August, 2021
307
May, 2021
287
October, 2019
286
August, 2017
200
May, 2022
186
June, 2019
184
February, 2023
160
July, 2018
132
February, 2021
117
May, 2019
90
December, 2017
89
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
46
March, 2020
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
November, 2020
4
October, 2022
3
August, 2018
2
June, 2018
1
August, 2022
Available data
68
bigWig
66
bam
49
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
89
Homo sapiens
Biosample type
67
tissue
22
primary cell
Organ
24
heart
18
brain
connective tissue
12
adipose tissue
12
epithelium
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
89
AMP
Genome assembly (visualization)
72
hg19
63
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
89 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
+ See 24 more…
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
+ See 13 more…
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