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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
31
total RNA-seq
19
WGBS
16
small RNA-seq
9
DNase-seq
6
ATAC-seq
6
RRBS
4
Hi-C
3
FAIRE-seq
Assay category
70
DNA binding
47
Transcription
25
DNA methylation
18
DNA accessibility
4
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
151
bam
143
bigWig
87
fastq
80
bed narrowPeak
75
bigBed narrowPeak
47
tsv
21
bed bedMethyl
21
bigBed bedMethyl
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
Organism
164
Homo sapiens
Biosample type
103
tissue
61
cell line
primary cell
Organ
61
liver
20
heart
15
blood
15
bodily fluid
13
brain
13
pancreas
11
adipose tissue
11
connective tissue
9
spleen
7
blood vessel
7
musculature of body
7
vasculature
5
limb
4
kidney
1
artery
1
pericardium
Project
164
AMP
Genome assembly (visualization)
140
GRCh38
131
hg19
Lab
164
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
164 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
DNase-seq
ATAC-seq
RRBS
Hi-C
FAIRE-seq
tissue
heart left ventricle
2
4
2
1
liver
4
2
1
2
spleen
6
2
1
body of pancreas
2
2
2
2
omental fat pad
4
1
1
+ See 27 more…
cell line
HepG2
45
1
GM12878
15
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