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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
16
snATAC-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
1
ATAC-seq
Assay category
65
Transcription
27
DNA methylation
17
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
85
bigWig
82
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
117
Homo sapiens
Biosample type
78
tissue
39
primary cell
Organ
21
heart
18
connective tissue
17
brain
14
pancreas
13
epithelium
12
adipose tissue
10
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
8
blood
8
bodily fluid
5
limb
2
artery
2
pericardium
1
eye
Project
101
AMP
16
T1D
Genome assembly (visualization)
84
hg19
74
GRCh38
Lab
101
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
117 results
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Clear Filters
total RNA-seq
small RNA-seq
snATAC-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
ATAC-seq
tissue
heart left ventricle
2
1
4
islet of Langerhans
4
1
omental fat pad
4
1
pancreas
4
1
right lobe of liver
2
2
1
+ See 25 more…
primary cell
peripheral blood mononuclear cell
8
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 21 more…
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