Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
43
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
9
ATAC-seq
8
Hi-C
Assay category
121
Transcription
27
DNA methylation
9
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
88
bigWig
82
bam
65
tsv
41
fastq
23
bed bedMethyl
23
bigBed bedMethyl
19
zippedFastqFolder
7
bed narrowPeak
4
bed bed3+
4
hdf5
bigBed narrowPeak
Organism
165
Homo sapiens
Biosample type
90
primary cell
75
tissue
Organ
32
epithelium
25
heart
25
pancreas
18
connective tissue
17
brain
12
adipose tissue
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
106
AMP
59
HPAP
Genome assembly (visualization)
89
hg19
82
GRCh38
Lab
106
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
165 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 23 more…
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
See all biosamples
Download