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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
45
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
15
RRBS
4
Hi-C
Assay category
79
DNA accessibility
60
DNA methylation
60
Transcription
4
3D chromatin structure
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
134
zippedFastqFolder
106
bam
bigWig
65
tsv
45
bed narrowPeak
24
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
txt
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
203
Homo sapiens
Biosample type
143
primary cell
60
tissue
Organ
106
pancreas
86
epithelium
22
liver
7
musculature of body
4
heart
4
kidney
4
limb
2
brain
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
pericardium
Project
134
HPAP
69
AMP
Genome assembly (visualization)
34
hg19
Lab
134
Klaus Kaestner, Upenn
25
AMP-T2D consortium
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
203 results
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ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cardiac fibroblast
1
+ See 8 more…
tissue
islet of Langerhans
18
6
1
liver
20
gastrocnemius medialis
4
heart left ventricle
2
1
skeletal muscle tissue
1
1
+ See 6 more…
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