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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
44
total RNA-seq
31
ChIP-seq
18
small RNA-seq
9
WGBS
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
195
DNA accessibility
65
Transcription
31
DNA binding
9
DNA methylation
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
300
bam
295
bigWig
217
bed narrowPeak
212
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
hdf5
Organism
300
Homo sapiens
Biosample type
227
tissue
73
primary cell
Organ
88
kidney
56
heart
48
musculature of body
43
brain
34
connective tissue
33
limb
25
epithelium
18
ureter
16
vasculature
14
blood vessel
13
adipose tissue
9
liver
8
pancreas
7
eye
5
artery
1
pericardium
Project
300
AMP
Genome assembly (visualization)
289
GRCh38
259
hg19
Lab
300
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
files.file_type!
hdf5
BIOSAMPLE
ASSAY
300 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
muscle of leg
13
1
brain
12
+ See 47 more…
primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
cardiac muscle cell
1
3
+ See 27 more…
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