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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
8
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
23
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
276
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
100
July, 2019
97
May, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
85
bigWig
82
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
100
Homo sapiens
Biosample type
69
tissue
31
primary cell
Organ
23
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
11
kidney
11
vasculature
10
blood vessel
9
liver
6
musculature of body
6
pancreas
3
artery
2
pericardium
1
eye
1
limb
Project
100
AMP
Genome assembly (visualization)
91
hg19
79
GRCh38
Lab
100
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
100 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
+ See 25 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
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